My gut feeling was the board was phoenixed anyway, or someone removed this in an attempt to phoenix it. I'd go with your call here, may as well phoenix it now.
I removed the battery and rewrote the eproms with phoenix code, but it didn't work
that's when I noticed the missing part, the odd thing is the board works with the cps2 suicide test (http://cps2shock.emu-france.info/download/suicidetester.zip)